SMTL ID : 6fpv.2 (1 other biounit)

A llama-derived JBP1-targeting nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: I.53, D.55, M.56, I.73, S.74, S.75, N.95, N.98, V.100 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.53, A:M.56, A:I.73, A:N.95, A:N.98 Water bridges: A:I.53 GOL.2: 5 residues within 4Å: Chain A: G.30, G.31, S.39, L.40, R.41 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.31, A:S.39, A:R.41, A:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Beusekom, B. et al., Characterization and structure determination of a llama-derived nanobody targeting the J-base binding protein 1. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-10-31

Peptides

Nanobody: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nanobody

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