SMTL ID : 6fqe.1

Phosphotriesterase PTE_A53_4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 10 residues within 4Å: Chain A: H.30, H.32, V.76, W.106, K.144, H.176, H.205 Ligands: ZN.2, ZN.3, D6K.4 No protein-ligand interaction detected (PLIP) FMT.6: 10 residues within 4Å: Chain B: H.30, H.32, V.76, W.106, K.144, H.176, H.205 Ligands: ZN.7, ZN.8, D6K.9 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.144

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: H.30, H.32, V.76, D.276 Ligands: FMT.1, ZN.3, D6K.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.30, A:H.32, A:D.276 ZN.3: 6 residues within 4Å: Chain A: W.106, H.176, H.205 Ligands: FMT.1, ZN.2, D6K.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.176, A:H.205, H2O.1 ZN.7: 6 residues within 4Å: Chain B: H.30, H.32, D.276 Ligands: FMT.6, ZN.8, D6K.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.30, B:H.32, B:D.276 ZN.8: 6 residues within 4Å: Chain B: W.106, H.176, H.205 Ligands: FMT.6, ZN.7, D6K.9 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.176, B:H.205, H2O.10

2 x D6K: (4~{S},6~{R})-2,2,6-trimethyl-1,3-dioxan-4-ol(Non-covalent)

D6K.4: 13 residues within 4Å: Chain A: H.30, H.32, G.35, W.106, H.205, H.232, L.246, D.276, L.278, F.281 Ligands: FMT.1, ZN.2, ZN.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.106, A:L.246, A:L.278, A:F.281 Salt bridges: A:H.32, A:H.205 D6K.9: 12 residues within 4Å: Chain B: H.30, H.32, G.35, W.106, H.205, H.232, L.246, D.276, F.281 Ligands: FMT.6, ZN.7, ZN.8 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.246, B:F.281 Salt bridges: B:H.32, B:H.205

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: R.16, P.18, R.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.16, A:P.18, A:R.93 Water bridges: A:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., PhosphotriesterasePTE_A53_4. To Be Published

Release Date

2019-03-13

Peptides

Parathion hydrolase: A
Parathion hydrolase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Parathion hydrolase

Parathion hydrolase

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