SMTL ID : 6frz.1

Phosphotriesterase PTE_A53_7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 10 residues within 4Å: Chain A: H.30, H.32, V.76, W.106, K.144, H.176, H.205 Ligands: ZN.2, ZN.3, E4T.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.144 FMT.9: 9 residues within 4Å: Chain B: H.30, H.32, V.76, W.106, K.144, H.176, H.205 Ligands: ZN.10, ZN.11 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.144

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.30, H.32, D.276 Ligands: FMT.1, ZN.3, E4T.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.30, A:H.32, A:D.276 ZN.3: 6 residues within 4Å: Chain A: W.106, H.176, H.205 Ligands: FMT.1, ZN.2, E4T.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.176, A:H.205 ZN.10: 5 residues within 4Å: Chain B: H.30, H.32, D.276 Ligands: FMT.9, ZN.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.30, B:H.32, B:D.276 ZN.11: 5 residues within 4Å: Chain B: W.106, H.176, H.205 Ligands: FMT.9, ZN.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.176, B:H.205

1 x E4T: 5-methylcyclohexane-1,1,3,3-tetrol(Non-covalent)

E4T.4: 14 residues within 4Å: Chain A: H.30, H.32, G.35, W.106, H.176, H.205, H.232, L.246, D.276, F.281 Ligands: FMT.1, ZN.2, ZN.3, TRS.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.106, A:F.281 Hydrogen bonds: A:D.276

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 7 residues within 4Å: Chain A: H.176, H.205, D.208, H.232, L.246, R.255 Ligands: E4T.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.208, A:D.208, A:H.232, A:R.255, A:R.255

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.6: 4 residues within 4Å: Chain A: R.16, G.17, P.18, R.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.93 Water bridges: A:R.93

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 7 residues within 4Å: Chain A: F.26, I.308, R.312, Q.318, A.322, T.325, V.326 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.312, A:Q.318, A:Q.318, A:T.325

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 10 residues within 4Å: Chain A: L.105, W.106, E.107, P.109, V.145, A.146, F.154, Q.155, V.158, L.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.146, A:Q.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., PhosphotriesterasePTE_A53_7. To Be Published

Release Date

2019-03-13

Peptides

Parathion hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Parathion hydrolase

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