SMTL ID : 6fs6.2 (5 other biounits)

Influenza A/California/04/2009 (pH1N1) endonuclease with bound inhibitor, baloxavir acid (BXA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.48, D.103, E.114, I.115 Ligands: MN.2, E4Z.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.48, A:D.103, A:E.114, A:I.115 MN.2: 5 residues within 4Å: Chain A: E.75, P.102, D.103 Ligands: MN.1, E4Z.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.75, A:D.103, H2O.1, H2O.1

1 x E4Z: Baloxavir acid(Non-covalent)

E4Z.3: 16 residues within 4Å: Chain A: A.27, M.28, Y.31, E.33, K.41, A.44, I.45, H.48, E.75, D.103, E.114, I.115, Y.125, K.129 Ligands: MN.1, MN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.45, A:I.45, A:H.48 Hydrogen bonds: A:K.129 Water bridges: A:Y.125 pi-Stacking: A:H.48 Halogen bonds: A:M.28, A:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Omoto, S. et al., Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil. Sci Rep (2018)

Release Date

2018-07-11

Peptides

Polymerase acidic protein,Polymerase acidic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polymerase acidic protein,Polymerase acidic protein

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