SMTL ID : 6fu5.1

Structure of the kinase domain of human RIPK2 in complex with the inhibitor CSLP18

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.26 Å

Oligo State

homo-dimer

Ligands

2 x E7N: ~{N}-[5-[2-azanyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]-2-methoxy-phenyl]propane-1-sulfonamide(Non-covalent)

E7N.1: 21 residues within 4Å: Chain A: L.24, S.25, S.29, G.30, V.32, A.45, K.47, E.66, L.79, T.95, E.96, Y.97, M.98, G.101, S.102, E.105, Q.150, N.151, L.153, A.163, D.164 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.32, A:V.32, A:K.47, A:K.47, A:L.79, A:L.153 Hydrogen bonds: A:L.24, A:T.95, A:M.98, A:N.151, A:D.164, A:D.164 E7N.2: 20 residues within 4Å: Chain B: L.24, S.25, V.32, A.45, K.47, E.66, L.70, L.79, T.95, E.96, Y.97, M.98, P.99, G.101, E.105, Q.150, N.151, L.153, A.163, D.164 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.24, B:L.24, B:V.32, B:V.32, B:A.45, B:K.47, B:L.153 Hydrogen bonds: B:K.47, B:T.95, B:M.98, B:N.151, B:D.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hrdinka, M. et al., Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling. EMBO J. (2018)

Release Date

2018-04-25

Peptides

Receptor-interacting serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 2

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