SMTL ID : 6fuf.1

Crystal structure of the rhodopsin-mini-Go complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 8 residues within 4Å: Chain A: A.116, T.117, E.121, I.188, M.206, H.210, W.264, K.295 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.116, A:T.117, A:I.188, A:M.206, A:H.210, A:W.264, A:K.295

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain A: T.3, E.4, N.14, G.17, V.19, R.20 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.3 Hydrogen bonds: A:N.14, A:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsai, C.J. et al., Crystal structure of rhodopsin in complex with a mini-Gosheds light on the principles of G protein selectivity. Sci Adv (2018)

Release Date

2018-10-03

Peptides

Rhodopsin: A
Guanine nucleotide-binding protein G(o) subunit alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Rhodopsin

Guanine nucleotide-binding protein G(o) subunit alpha