SMTL ID : 6fux.1

Structure of aminoglycoside phosphotransferase APH(3'')-Id from Streptomyces rimosus ATCC10970 in complex with ADP and streptomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.43, E.56, V.60, I.208, D.209, L.210 Ligands: ADP.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.209, A:L.210 Water bridges: A:K.43

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 9 residues within 4Å: Chain A: V.32, Y.41, P.71, T.87, S.88, T.89, V.90, I.208 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.87, A:S.88, A:V.90 pi-Stacking: A:Y.41, A:Y.41

1 x SRY: STREPTOMYCIN(Non-covalent)

SRY.3: 15 residues within 4Å: Chain A: D.150, F.151, L.152, P.153, E.154, R.157, D.189, C.191, P.193, L.224, T.228, E.231, D.267, P.268, W.271 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.224, A:T.228 Hydrogen bonds: A:D.150, A:F.151, A:E.154, A:R.157, A:R.157, A:N.194, A:D.267, A:D.267 Water bridges: A:D.189, A:D.209, A:D.209, A:D.209, A:W.271 Salt bridges: A:E.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alekseeva, M.G. et al., Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3′′)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970. Arch.Biochem.Biophys. (2019)

Release Date

2019-03-20

Peptides

Aminoglycoside phosphotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminoglycoside phosphotransferase

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