SMTL ID : 6fw1.1

Phosphotriesterase PTE_C23_5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 10 residues within 4Å: Chain A: H.22, H.24, V.68, W.98, K.136, H.168, H.197 Ligands: ZN.2, ZN.3, E8W.4 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.22, H.24, D.268 Ligands: FMT.1, ZN.3, E8W.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.22, A:H.24, A:D.268 ZN.3: 6 residues within 4Å: Chain A: W.98, H.168, H.197 Ligands: FMT.1, ZN.2, E8W.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.168, A:H.197

1 x E8W: 2-[methoxy(methyl)phosphoryl]oxypropane(Non-covalent)

E8W.4: 11 residues within 4Å: Chain A: H.22, H.24, G.27, W.98, H.168, H.197, D.268, L.270 Ligands: FMT.1, ZN.2, ZN.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.270

1 x E8N: 1-ethyl-1-methyl-cyclohexane(Covalent)

E8N.5: 4 residues within 4Å: Chain A: I.255, V.308, S.309, T.312 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.255, A:V.308, A:T.312

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: Y.123, G.124, I.125, E.126, D.127, T.128, G.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.123, A:G.129 Water bridges: A:T.128 GOL.7: 7 residues within 4Å: Chain A: A.30, G.31, R.34, G.74, R.75, D.76, E.126 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.31, A:R.34, A:R.34, A:G.74, A:E.126 Water bridges: A:F.32, A:L.33, A:V.77

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 4 residues within 4Å: Chain A: S.172, T.201, D.202, D.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.202 Water bridges: A:S.172, A:S.172, A:D.203 SO4.9: 3 residues within 4Å: Chain A: W.244, Q.245, R.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.244, A:Q.245 Salt bridges: A:R.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., PhosphotriesterasePTE_C23_5. To Be Published

Release Date

2019-03-27

Peptides

Parathion hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Parathion hydrolase

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