SMTL ID : 6fw2.1

Crystal Structure of human mARC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)

MTE.1: 22 residues within 4Å: Chain A: K.20, S.21, D.44, R.45, R.60, S.320, D.321, T.322, S.323, P.324, F.325, L.326, F.349, R.350, N.352, C.382, S.383, R.384, C.385, L.387, Y.429 Ligands: EFK.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.21, A:R.45, A:R.45, A:D.321, A:D.321, A:T.322, A:S.323, A:S.323, A:L.326, A:R.350, A:N.352 Water bridges: A:K.20, A:S.320, A:D.321 Salt bridges: A:K.20, A:D.44, A:R.45, A:R.350

1 x EFK: oxidanyl(oxidanylidene)molybdenum(Non-covalent)

EFK.2: 5 residues within 4Å: Chain A: S.383, R.384, C.385, T.388 Ligands: MTE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.383, A:R.384, A:C.385

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.3: 9 residues within 4Å: Chain A: E.92, D.101, G.111, H.112, L.113, D.151, F.185, Q.186, R.226 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.92, A:D.101, A:E.103, A:L.113, A:L.113, A:V.184, A:F.185, A:Q.186, A:R.226

4 x MOO: MOLYBDATE ION(Non-covalent)

MOO.4: 3 residues within 4Å: Chain A: R.95, L.96, K.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.95, A:L.96, A:K.97 MOO.5: 6 residues within 4Å: Chain A: G.194, F.195, T.196, N.197, S.198, N.213 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.197, A:N.197, A:S.198, A:S.198, A:N.213 Water bridges: A:T.196, A:T.196 MOO.6: 1 residues within 4Å: Chain A: W.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.176 Water bridges: A:K.205 MOO.7: 4 residues within 4Å: Chain A: T.223, P.224, N.225, R.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.225, A:N.225, A:R.226 Water bridges: A:R.229, A:R.229

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 3 residues within 4Å: Chain A: R.312, P.313, K.314 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.314 Water bridges: A:K.314 Salt bridges: A:K.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubitza, C. et al., Crystal structure of human mARC1 reveals its exceptional position among eukaryotic molybdenum enzymes. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-10-31

Peptides

Mitochondrial amidoxime-reducing component 1,Endolysin,Mitochondrial amidoxime-reducing component 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitochondrial amidoxime-reducing component 1,Endolysin,Mitochondrial amidoxime-reducing component 1