SMTL ID : 6fxw.1

Structure of Leishmania infantum type B ribose 5-phosphate isomerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.14, R.116 Chain D: H.105, R.140, H.141, R.144 11 PLIP interactions: 4 interactions with chain A, 7 interactions with chain D Water bridges: A:R.116, A:R.116, D:H.141, D:H.141, D:R.144, D:R.144 Salt bridges: A:H.14, A:R.116, D:R.140, D:H.141, D:R.144 SO4.2: 3 residues within 4Å: Chain A: R.89, N.107, H.109 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.107 Salt bridges: A:R.89, A:H.109 SO4.3: 6 residues within 4Å: Chain B: H.14, R.116 Chain C: H.105, R.140, H.141, R.144 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain B Water bridges: C:H.105, C:R.144, C:R.144, B:R.116, B:R.116 Salt bridges: C:R.140, C:H.141, C:R.144, B:H.14, B:R.116 SO4.4: 3 residues within 4Å: Chain B: R.89, N.107, H.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.107 Salt bridges: B:R.89, B:H.109 SO4.5: 6 residues within 4Å: Chain B: H.105, R.140, H.141, R.144 Chain C: H.14, R.116 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain C Water bridges: B:H.105, B:R.144, B:R.144, C:R.116, C:R.116 Salt bridges: B:R.140, B:H.141, B:R.144, C:H.14, C:R.116 SO4.6: 3 residues within 4Å: Chain C: R.89, N.107, H.109 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.107 Salt bridges: C:R.89, C:H.109 SO4.7: 6 residues within 4Å: Chain A: H.105, R.140, H.141, R.144 Chain D: H.14, R.116 11 PLIP interactions: 4 interactions with chain D, 7 interactions with chain A Water bridges: D:R.116, D:R.116, A:H.141, A:H.141, A:R.144, A:R.144 Salt bridges: D:H.14, D:R.116, A:R.140, A:H.141, A:R.144 SO4.8: 3 residues within 4Å: Chain D: R.89, N.107, H.109 3 PLIP interactions: 3 interactions with chain D Water bridges: D:N.107 Salt bridges: D:R.89, D:H.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronin, C. et al., Structure of Leishmania infantum type B ribose 5-phosphate isomerase (TcRpiB). To Be Published

Release Date

2019-05-22

Peptides

Putative ribose 5-phosphate isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Putative ribose 5-phosphate isomerase