SMTL ID : 6fy4.1 (1 other biounit)

Structure of human NAD(P) H:quinone oxidoreductase in complex with N-(2-bromophenyl)pyrrolidine-1-sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 22 residues within 4Å: Chain A: H.12, T.16, S.17, F.18, N.19, A.21, P.103, L.104, Q.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, I.193, R.201, L.205 Chain B: Q.67, Y.68, P.69 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Q.105, A:Q.105, B:Y.68, B:P.69 Hydrogen bonds: A:F.18, A:N.19, A:N.19, A:L.104, A:W.106, A:F.107, A:T.148, A:T.148, A:G.150, A:G.151, A:Y.156, A:Y.156, B:Q.67 Salt bridges: A:H.12 pi-Stacking: A:F.18 FAD.3: 25 residues within 4Å: Chain A: N.65, Q.67, Y.68, P.69, E.118 Chain B: H.12, T.16, S.17, F.18, N.19, A.21, P.103, L.104, Q.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, I.193, R.201, L.205 Ligands: EAW.2 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Q.105, B:Q.105, A:Y.68, A:E.118 Hydrogen bonds: B:F.18, B:N.19, B:N.19, B:L.104, B:W.106, B:F.107, B:T.148, B:T.148, B:G.150, B:G.151, B:Y.156, B:R.201, A:N.65, A:N.65 Salt bridges: B:H.12

1 x EAW: N-(2-bromophenyl)pyrrolidine-1-sulfonamide(Non-covalent)

EAW.2: 7 residues within 4Å: Chain A: Y.127, Y.129, F.179 Chain B: W.106, G.150, G.151 Ligands: FAD.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.127, A:Y.129, A:F.179 pi-Stacking: B:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strandback, E. et al., A small molecule chaperone rescues the stability and activity of a cancer-associated variant of NAD(P)H:quinone oxidoreductase 1 in vitro. Febs Lett. (2020)

Release Date

2019-03-20

Peptides

NAD(P)H dehydrogenase [quinone] 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD(P)H dehydrogenase [quinone] 1

Related Entries With Identical Sequence