SMTL ID : 6fyj.1

Cytochrome P450 peroxygenase CYP152K6 in complex with Myristic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 12 residues within 4Å: Chain A: L.82, F.174, A.178, R.246, P.247, F.293, F.294, P.295, F.296, M.404, P.405 Ligands: HEM.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.178, A:P.247, A:F.293, A:P.295, A:F.296 Salt bridges: A:R.246

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 29 residues within 4Å: Chain A: Y.63, R.70, V.88, Q.89, H.96, K.100, F.103, N.243, I.244, P.247, I.248, A.250, I.251, F.254, F.293, F.294, V.297, L.322, Q.356, G.357, G.364, H.365, R.366, C.367, A.368, G.369, V.372, T.373 Ligands: MYR.1 24 PLIP interactions: 23 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.88, A:F.103, A:I.244, A:P.247, A:I.251, A:I.251, A:F.254, A:F.293, A:F.293, A:F.294, A:V.297, A:L.322, A:Q.356, A:A.368, A:V.372 Hydrogen bonds: A:Y.63 Water bridges: A:R.70, A:H.365 Salt bridges: A:R.70, A:H.96, A:K.100, A:H.365 Metal complexes: A:C.367, H2O.6

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: L.21, M.22, M.404 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Girvan, H.M. et al., Structural and catalytic properties of the peroxygenase P450 enzyme CYP152K6 from Bacillus methanolicus. J. Inorg. Biochem. (2018)

Release Date

2018-08-22

Peptides

Fatty-acid peroxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty-acid peroxygenase