SMTL ID : 6fyo.1

X-RAY STRUCTURE OF CLK1-KD(148-484)/Cpd-2 AT 2.32A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

1 x EAQ: 6-~{tert}-butyl-~{N}-[6-(1~{H}-pyrazol-4-yl)-1~{H}-imidazo[1,2-a]pyridin-2-yl]pyridine-3-carboxamide(Non-covalent)

EAQ.1: 15 residues within 4Å: Chain A: L.22, A.44, K.46, E.61, V.80, F.96, E.97, L.98, L.99, G.100, L.101, L.150, S.154, V.179, D.180 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.44, A:V.80, A:F.96, A:V.179 Hydrogen bonds: A:E.61, A:L.99, A:L.99, A:D.180 Water bridges: A:D.180

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.78, K.122, Y.125, Q.126, K.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.126 Salt bridges: A:R.78, A:K.129 SO4.3: 2 residues within 4Å: Chain A: S.279, R.282 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.286, A:R.286 Salt bridges: A:R.282 SO4.4: 2 residues within 4Å: Chain A: R.198, H.237 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.198 Salt bridges: A:R.198, A:H.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallen, J. et al., X-ray Structures and Feasibility Assessment of CLK2 Inhibitors for Phelan-McDermid Syndrome. ChemMedChem (2018)

Release Date

2018-07-18

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK1