SMTL ID : 6fz6.2 (1 other biounit)

Crystal Structure of a radical SAM methyltransferase from Sphaerobacter thermophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain A: C.129, V.131, G.132, C.133, C.136, G.139, G.179, E.180, S.213 Ligands: SAH.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Salt bridges: A:E.180 Metal complexes: A:C.129, A:C.133, A:C.136, SAH.2

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 21 residues within 4Å: Chain A: F.135, C.136, M.175, M.176, G.177, G.179, E.180, S.211, T.212, S.213, S.234, H.236, E.276, V.278, I.307, L.309, N.310, T.312, C.353, G.354 Ligands: SF4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.180, A:S.234, A:S.234, A:N.310, A:N.310, A:N.310 Water bridges: A:G.354 pi-Stacking: A:F.135

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 1 residues within 4Å: Chain A: R.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaw, J.M. et al., Crystal Structure of a radical SAM methyltransferase from Sphaerobacter thermophilus. To Be Published

Release Date

2019-04-10

Peptides

Probable dual-specificity RNA methyltransferase RlmN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable dual-specificity RNA methyltransferase RlmN

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