SMTL ID : 6fzt.1

Crystal structure of Smad8_9-MH1 bound to the GGCGC site.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.68, C.113, C.125, H.130 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.68, A:C.113, A:C.125, A:H.130 ZN.3: 4 residues within 4Å: Chain D: C.68, C.113, C.125, H.130 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.68, D:C.113, D:C.125, D:H.130

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.22, K.25, G.27, E.31 Chain D: E.31 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:E.31, D:E.31 Water bridges: A:K.25, A:G.27 GOL.4: 6 residues within 4Å: Chain D: E.30, W.33, R.84, K.85, G.86, R.94 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.84, D:K.85, D:R.94 Water bridges: D:K.85, D:L.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz, L. et al., Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes. Computational and Structural Biotechnology Journal (2021)

Release Date

2019-10-02

Peptides

Mothers against decapentaplegic homolog 9: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

Mothers against decapentaplegic homolog 9