SMTL ID : 6fzx.1

LasB, hydroxymate Inhibitor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x EEK: ~{N}-(3,4-dichlorophenyl)-~{N}'-oxidanyl-propanediamide(Non-covalent)

EEK.1: 12 residues within 4Å: Chain A: N.112, A.113, Y.114, H.140, E.141, H.144, Y.155, E.164, D.221, H.223, H.224 Ligands: ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.223 Hydrogen bonds: A:A.113, A:Y.155 Water bridges: A:W.115, A:W.115 pi-Stacking: A:H.223

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.140, H.144, Y.155, E.164 Ligands: EEK.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.140, A:H.144, A:E.164

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.136, E.172, E.175, D.183, L.185 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.136, A:E.172, A:E.175, A:D.183, H2O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: Q.10, Q.65, N.67, G.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.10, A:Q.65, A:G.68

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: G.35, N.36, F.84, S.94, L.96, H.98, K.99, L.100 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.36, A:S.94, A:L.96, A:L.96, A:H.98 Water bridges: A:G.35, A:G.35, A:K.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kany, A.M. et al., Tackling Pseudomonas aeruginosa Virulence by a Hydroxamic Acid-Based LasB Inhibitor. ACS Chem. Biol. (2018)

Release Date

2018-09-05

Peptides

Keratinase KP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Keratinase KP2

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