SMTL ID : 6g0c.1

Crystal structure of SdeA catalytic core

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)

1PS.1: 7 residues within 4Å: Chain A: D.177, W.182, V.189, N.192, Q.193, R.219, W.220 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.182, A:W.220

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.234, Q.235, H.238, M.328, P.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.235 EDO.3: 4 residues within 4Å: Chain A: H.238, A.239, Y.241, R.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.238, A:R.339 EDO.4: 6 residues within 4Å: Chain A: N.18, G.19, F.20, S.21, T.24, D.25 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.18, A:N.18, A:S.21, A:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalayil, S. et al., Insights into catalysis and function of phosphoribosyl-linked serine ubiquitination. Nature (2018)

Release Date

2018-05-30

Peptides

Ubiquitinating/deubiquitinating enzyme SdeA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitinating/deubiquitinating enzyme SdeA