SMTL ID : 6g19.1

CryoEM structure of the MDA5-dsRNA filament with 74-degree helical twist

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.68 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.583, N.585, C.586, M.588, C.638, C.640, Q.642, W.644 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.583, A:C.586, A:C.638, A:C.640

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 10 residues within 4Å: Chain A: Q.2, R.4, Q.7, T.26, G.27, S.28, G.29, K.30, T.31, R.32 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.2, A:R.4, A:R.4, A:G.27, A:G.29, A:K.30, A:T.31, A:R.32 pi-Cation interactions: A:R.4, A:R.4, A:R.32, A:R.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Q. et al., Cryo-EM Structures of MDA5-dsRNA Filaments at Different Stages of ATP Hydrolysis. Mol. Cell (2018)

Release Date

2018-11-21

Peptides

Interferon-induced helicase C domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced helicase C domain-containing protein 1

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