- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
FMT.2: 2 residues within 4Å:- Chain A: Q.299, L.302
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.299
FMT.7: 6 residues within 4Å:- Chain B: H.27, F.28, S.61, T.62, R.63, K.64
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.28
FMT.8: 3 residues within 4Å:- Chain A: R.265
- Chain B: T.264, R.265
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:W.261, A:R.265, B:R.265
- Hydrogen bonds: B:T.264
FMT.11: 2 residues within 4Å:- Chain C: Q.299, L.302
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.299
FMT.16: 6 residues within 4Å:- Chain D: H.27, F.28, S.61, T.62, R.63, K.64
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:F.28
FMT.17: 3 residues within 4Å:- Chain C: R.265
- Chain D: T.264, R.265
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Water bridges: D:R.265, C:W.261, C:R.265
- 2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
PEO.5: 3 residues within 4Å:- Chain A: D.137, H.141, L.145
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.137, B:R.234
PEO.6: 5 residues within 4Å:- Chain A: K.166, E.167, I.168, Y.287, E.298
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.167
PEO.9: 3 residues within 4Å:- Chain B: I.168, P.169, Q.305
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.169, B:Q.305, B:Q.305
PEO.14: 3 residues within 4Å:- Chain C: D.137, H.141, L.145
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:D.137, D:R.234
PEO.15: 5 residues within 4Å:- Chain C: K.166, E.167, I.168, Y.287, E.298
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.287, C:E.298
PEO.18: 3 residues within 4Å:- Chain D: I.168, P.169, Q.305
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.305, D:Q.305
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pedre, B. et al., Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-05
- Peptides
- Hydrogen peroxide-inducible genes activator: AC
Hydrogen peroxide-inducible genes activator: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JC
JB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pedre, B. et al., Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-05
- Peptides
- Hydrogen peroxide-inducible genes activator: AC
Hydrogen peroxide-inducible genes activator: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JC
JB
BD
B