SMTL ID : 6g1o.1

Structure of Pseudomonas aeruginosa Isocitrate Lyase, ICL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.184, D.186, E.213 Ligands: GLV.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.184, A:D.184, A:D.186, H2O.1, H2O.1 CA.3: 4 residues within 4Å: Chain B: D.184, D.186, E.213 Ligands: GLV.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.184, B:D.184, B:D.186, H2O.8, H2O.8 CA.5: 4 residues within 4Å: Chain C: D.184, D.186, E.213 Ligands: GLV.6 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.184, C:D.184, C:D.186, H2O.15, H2O.15 CA.7: 4 residues within 4Å: Chain D: D.184, D.186, E.213 Ligands: GLV.8 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.184, D:D.184, D:D.186, H2O.22, H2O.22

4 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.2: 8 residues within 4Å: Chain A: D.117, S.119, D.186, E.213, Q.215, S.217, R.260 Ligands: CA.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.215, A:S.217 Water bridges: A:D.117, A:D.117, A:S.217, A:R.260, A:R.260 Salt bridges: A:R.260 GLV.4: 8 residues within 4Å: Chain B: D.117, S.119, D.186, E.213, Q.215, S.217, R.260 Ligands: CA.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.215, B:S.217 Water bridges: B:D.117, B:D.117, B:S.217, B:R.260, B:R.260 Salt bridges: B:R.260 GLV.6: 8 residues within 4Å: Chain C: D.117, S.119, D.186, E.213, Q.215, S.217, R.260 Ligands: CA.5 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:Q.215, C:S.217 Water bridges: C:S.119, C:D.186, C:D.186, C:S.217, C:R.260, C:R.260 Salt bridges: C:R.260 GLV.8: 8 residues within 4Å: Chain D: D.117, S.119, D.186, E.213, Q.215, S.217, R.260 Ligands: CA.7 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Q.215, D:S.217 Water bridges: D:S.119, D:D.186, D:D.186, D:S.217, D:R.260, D:R.260 Salt bridges: D:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crousilles, A. et al., Gluconeogenic precursor availability regulates flux through the glyoxylate shunt inPseudomonas aeruginosa. J. Biol. Chem. (2018)

Release Date

2018-08-01

Peptides

Isocitrate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Isocitrate lyase