SMTL ID : 6g25.1

X-ray structure of NSD3-PWWP1 in complex with compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x EHQ: 3,5-dimethyl-4-(4-pyridin-4-yl-1~{H}-pyrazol-3-yl)-1,2-oxazole(Non-covalent)

EHQ.1: 9 residues within 4Å: Chain A: V.16, Y.19, W.22, F.50, S.52, Q.54, E.56, A.58, Q.105 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.19, A:Y.19, A:W.22, A:F.50, A:F.50, A:F.50, A:E.56, A:A.58 Hydrogen bonds: A:V.16, A:S.52 Water bridges: A:V.16, A:Q.54 pi-Stacking: A:Y.19, A:F.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bottcher, J. et al., Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3. Nat.Chem.Biol. (2019)

Release Date

2019-06-26

Peptides

Histone-lysine N-methyltransferase NSD3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD3

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