SMTL ID : 6g27.1

X-ray structure of NSD3-PWWP1 in complex with compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x EHE: 5-methyl-6-phenyl-2-piperidin-4-yl-pyridazin-3-one(Non-covalent)

EHE.1: 8 residues within 4Å: Chain A: V.16, Y.19, W.22, F.50, S.52, E.56, R.57, Q.105 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.16, A:Y.19, A:Y.19, A:W.22, A:W.22, A:F.50, A:F.50, A:E.56 Hydrogen bonds: A:E.56 Water bridges: A:R.57 pi-Stacking: A:Y.19, A:F.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bottcher, J. et al., Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3. Nat.Chem.Biol. (2019)

Release Date

2019-06-26

Peptides

Histone-lysine N-methyltransferase NSD3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD3

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