SMTL ID : 6g28.1

Human [protein ADP-ribosylargenine] hydrolase ARH1 in complex with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 28 residues within 4Å: Chain A: D.65, D.66, A.108, P.109, G.110, G.111, A.112, S.113, S.134, H.135, E.136, G.137, G.138, C.139, G.140, M.143, H.173, H.175, T.177, Y.273, S.274, S.279, S.280, D.312, D.314, S.315 Ligands: MG.2, MG.3 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:D.65, A:G.110, A:G.111, A:A.112, A:S.113, A:S.113, A:S.134, A:G.137, A:G.140, A:S.274, A:S.274, A:S.274, A:S.279, A:S.280, A:S.280, A:S.315, A:S.315 Water bridges: A:S.64, A:G.138, A:G.138, A:T.177, A:Y.273 Salt bridges: A:H.173 pi-Stacking: A:Y.273

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: S.64, D.65, D.66, D.314 Ligands: AR6.1, MG.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.64, A:D.65, A:D.66, A:D.314, H2O.5 MG.3: 5 residues within 4Å: Chain A: D.312, D.314, S.315 Ligands: AR6.1, MG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.312, A:D.314, A:S.315, H2O.10

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: L.47, G.52, L.53, H.304 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: Y.343, N.345, R.346 Ligands: CL.6 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.344, N.345 Ligands: CL.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rack, J.G.M. et al., (ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition. Cell Chem Biol (2018)

Release Date

2018-11-28

Peptides

[Protein ADP-ribosylarginine] hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Protein ADP-ribosylarginine] hydrolase

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