SMTL ID : 6g32.1

Crystal structure of human geranylgeranyl diphosphate synthase mutant D188Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.75, R.80, Q.192, Y.195, K.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.80, A:Q.192, A:K.219 GOL.2: 5 residues within 4Å: Chain B: D.71, D.75, R.80, K.158, Y.195 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.71, B:R.80, B:R.80, B:K.158, B:Y.195 GOL.3: 4 residues within 4Å: Chain C: D.71, D.75, R.80, Y.195 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.71, C:D.75, C:R.80 GOL.4: 4 residues within 4Å: Chain D: D.71, D.75, R.80, Y.195 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.71, D:Y.195 GOL.5: 6 residues within 4Å: Chain E: D.75, R.80, Y.195, D.214, E.217, K.219 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:D.75, E:R.80 GOL.6: 3 residues within 4Å: Chain F: D.71, D.75, R.80 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.71, F:R.80, F:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lisnyansky, M. et al., Reduced Activity of Geranylgeranyl Diphosphate Synthase Mutant Is Involved in Bisphosphonate-Induced Atypical Fractures. Mol. Pharmacol. (2018)

Release Date

2018-10-17

Peptides

Geranylgeranyl pyrophosphate synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
A

F
B

Geranylgeranyl pyrophosphate synthase

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