SMTL ID : 6g3c.2 (1 other biounit)

Crystal Structure of JAK2-V617F pseudokinase domain in complex with Compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x EKT: 2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-5,7,7-trimethyl-8-(3-methylbutyl)pteridin-6-one(Non-covalent)

EKT.1: 17 residues within 4Å: Chain A: L.15, G.16, L.43, K.45, V.74, Q.90, E.91, F.92, V.93, K.94, G.96, S.97, K.141, N.142, I.143, L.144, S.162 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.15, A:L.15, A:F.92, A:K.141, A:L.144 Hydrogen bonds: A:K.45, A:V.93, A:V.93, A:G.96, A:S.162 Halogen bonds: A:L.15

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: T.19, I.175, R.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.179 Water bridges: A:G.18, A:F.20 EDO.3: 5 residues within 4Å: Chain A: L.247, N.250, P.260, A.264, D.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.250 Water bridges: A:D.268 EDO.4: 3 residues within 4Å: Chain A: E.129, E.130, R.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.263 Water bridges: A:E.129 EDO.5: 4 residues within 4Å: Chain A: C.139, K.141, W.182, K.216 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McNally, R. et al., Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain. Acs Chem.Biol. (2019)

Release Date

2019-03-27

Peptides

Tyrosine-protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase

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