This entry has been superseded by
8P7V
on Feb. 14, 2024, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.2: 8 residues within 4Å:- Chain A: H.22, H.24, V.68, K.136, D.268
- Ligands: FMT.1, ZN.3, GB.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.22, A:H.24, A:D.268
ZN.3: 6 residues within 4Å:- Chain A: W.98, H.168, H.197
- Ligands: FMT.1, ZN.2, GB.5
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:H.168, A:H.197
ZN.11: 8 residues within 4Å:- Chain B: H.22, H.24, V.68, K.136, D.268
- Ligands: FMT.10, ZN.12, GB.14
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.22, B:H.24, B:D.268
ZN.12: 6 residues within 4Å:- Chain B: W.98, H.168, H.197
- Ligands: FMT.10, ZN.11, GB.14
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:H.168, B:H.197
- 2 x E8N: 1-ethyl-1-methyl-cyclohexane(Covalent)
E8N.4: 4 residues within 4Å:- Chain A: I.255, V.308, S.309, T.312
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.255, A:V.308, A:T.312
E8N.13: 4 residues within 4Å:- Chain B: I.255, V.308, S.309, T.312
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.255, B:V.308, B:T.312
- 2 x GB: METHYLPHOSPHONIC ACID ESTER GROUP(Non-covalent)
GB.5: 9 residues within 4Å:- Chain A: H.22, H.24, W.98, H.168, H.197, D.268
- Ligands: FMT.1, ZN.2, ZN.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.197
GB.14: 9 residues within 4Å:- Chain B: H.22, H.24, W.98, H.168, H.197, D.268
- Ligands: FMT.10, ZN.11, ZN.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.197
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: Y.123, G.124, I.125, E.126, D.127, T.128, G.129
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.124, A:T.128, A:G.129
GOL.7: 7 residues within 4Å:- Chain A: A.30, G.31, R.34, G.74, R.75, D.76, E.126
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.31, A:R.34, A:R.34, A:G.74, A:D.76
- Water bridges: A:F.32, A:L.33, A:V.77, A:V.77
GOL.8: 5 residues within 4Å:- Chain A: R.106, T.144, P.145, F.146, Q.147
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.146
- Water bridges: A:Q.147
GOL.15: 7 residues within 4Å:- Chain B: Y.123, G.124, I.125, E.126, D.127, T.128, G.129
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.124, B:T.128, B:G.129
- Water bridges: B:Y.123
GOL.16: 7 residues within 4Å:- Chain B: A.30, G.31, R.34, G.74, R.75, D.76, E.126
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:G.31, B:R.34, B:R.34, B:G.74, B:D.76
- Water bridges: B:F.32, B:L.33, B:D.76, B:V.77
GOL.17: 5 residues within 4Å:- Chain B: R.106, T.144, P.145, F.146, Q.147
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.144, B:F.146
- Water bridges: B:Q.147
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 3 residues within 4Å:- Chain A: W.244, Q.245, R.298
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.244, A:Q.245
- Salt bridges: A:R.298
SO4.18: 3 residues within 4Å:- Chain B: W.244, Q.245, R.298
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.244, B:Q.245
- Salt bridges: B:R.298
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dym, O. et al., PhosphotriesterasePTE_C23_A203L_3. To Be Published
- Release Date
- 2019-04-10
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A