- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: E.50, L.53, P.54, G.55, A.56
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.56, A:A.56
NA.8: 5 residues within 4Å:- Chain B: E.50, L.53, P.54, G.55, A.56
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.50, B:A.56
NA.14: 5 residues within 4Å:- Chain C: E.50, L.53, P.54, G.55, A.56
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.53, C:A.56
NA.20: 5 residues within 4Å:- Chain D: E.50, L.53, P.54, G.55, A.56
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.56, D:A.56
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.3: 6 residues within 4Å:- Chain A: G.20, W.188, T.189, P.190, E.193, P.221
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.20, A:W.188, A:E.193
- Water bridges: A:G.20
BGC.9: 6 residues within 4Å:- Chain B: G.20, W.188, T.189, P.190, E.193, P.221
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.20, B:W.188, B:E.193
- Water bridges: B:G.20
BGC.15: 6 residues within 4Å:- Chain C: G.20, W.188, T.189, P.190, E.193, P.221
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.20, C:W.188, C:E.193, C:E.193
- Water bridges: C:G.20
BGC.21: 6 residues within 4Å:- Chain D: G.20, W.188, T.189, P.190, E.193, P.221
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.20, D:W.188, D:E.193, D:E.193
- Water bridges: D:G.20
- 4 x F45: [6-(3,4-dihydroxyphenyl)pyridin-2-yl](4-fluoro-3-hydroxyphenyl)methanone(Non-covalent)
F45.4: 19 residues within 4Å:- Chain A: H.93, P.96, S.141, L.142, V.143, Q.148, A.149, Q.150, A.151, Y.154, P.184, G.185, N.186, L.191, W.192, L.195, M.199
- Ligands: NAD.1, DMS.5
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:P.96, A:Y.154, A:W.192, A:W.192, A:L.195, A:L.195
- Hydrogen bonds: A:H.93, A:S.141, A:S.141, A:Q.148, A:Q.150, A:Y.154
- pi-Stacking: A:H.93
- Halogen bonds: A:P.184
F45.10: 19 residues within 4Å:- Chain B: H.93, P.96, S.141, L.142, V.143, Q.148, A.149, Q.150, A.151, Y.154, P.184, G.185, N.186, L.191, W.192, L.195, M.199
- Ligands: NAD.7, DMS.11
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:P.96, B:Y.154, B:W.192, B:W.192, B:L.195, B:L.195
- Hydrogen bonds: B:H.93, B:S.141, B:S.141, B:Q.148, B:Q.150, B:Y.154
- pi-Stacking: B:H.93
- Halogen bonds: B:P.184
F45.16: 19 residues within 4Å:- Chain C: H.93, P.96, S.141, L.142, V.143, Q.148, A.149, Q.150, A.151, Y.154, P.184, G.185, N.186, L.191, W.192, L.195, M.199
- Ligands: NAD.13, DMS.17
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:P.96, C:Y.154, C:W.192, C:W.192, C:L.195, C:L.195
- Hydrogen bonds: C:H.93, C:S.141, C:S.141, C:Q.148, C:Q.150, C:Y.154
- pi-Stacking: C:H.93
- Halogen bonds: C:P.184
F45.22: 19 residues within 4Å:- Chain D: H.93, P.96, S.141, L.142, V.143, Q.148, A.149, Q.150, A.151, Y.154, P.184, G.185, N.186, L.191, W.192, L.195, M.199
- Ligands: NAD.19, DMS.23
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:P.96, D:Y.154, D:W.192, D:W.192, D:L.195, D:L.195
- Hydrogen bonds: D:H.93, D:S.141, D:S.141, D:Q.148, D:Q.150, D:Y.154
- pi-Stacking: D:H.93
- Halogen bonds: D:P.184
- 8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.5: 11 residues within 4Å:- Chain A: L.142, V.143, I.146, Q.148, G.185, N.186, A.212, Q.213, A.249
- Chain C: A.253
- Ligands: F45.4
No protein-ligand interaction detected (PLIP)DMS.6: 4 residues within 4Å:- Chain A: G.81, R.82, K.131, S.132
No protein-ligand interaction detected (PLIP)DMS.11: 11 residues within 4Å:- Chain B: L.142, V.143, I.146, Q.148, G.185, N.186, A.212, Q.213, A.249
- Chain D: A.253
- Ligands: F45.10
No protein-ligand interaction detected (PLIP)DMS.12: 4 residues within 4Å:- Chain B: G.81, R.82, K.131, S.132
No protein-ligand interaction detected (PLIP)DMS.17: 11 residues within 4Å:- Chain A: A.253
- Chain C: L.142, V.143, I.146, Q.148, G.185, N.186, A.212, Q.213, A.249
- Ligands: F45.16
No protein-ligand interaction detected (PLIP)DMS.18: 4 residues within 4Å:- Chain C: G.81, R.82, K.131, S.132
No protein-ligand interaction detected (PLIP)DMS.23: 11 residues within 4Å:- Chain B: A.253
- Chain D: L.142, V.143, I.146, Q.148, G.185, N.186, A.212, Q.213, A.249
- Ligands: F45.22
No protein-ligand interaction detected (PLIP)DMS.24: 4 residues within 4Å:- Chain D: G.81, R.82, K.131, S.132
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Badran, M. et al., Mutational and structural studies uncover crucial amino acids determining activity and stability of 17beta-HSD14. J.Steroid Biochem.Mol.Biol. (2019)
- Release Date
- 2019-04-10
- Peptides
- 17-beta-hydroxysteroid dehydrogenase 14: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
- 4 x F45: [6-(3,4-dihydroxyphenyl)pyridin-2-yl](4-fluoro-3-hydroxyphenyl)methanone(Non-covalent)
- 8 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Badran, M. et al., Mutational and structural studies uncover crucial amino acids determining activity and stability of 17beta-HSD14. J.Steroid Biochem.Mol.Biol. (2019)
- Release Date
- 2019-04-10
- Peptides
- 17-beta-hydroxysteroid dehydrogenase 14: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A