SMTL ID : 6g5j.2 (1 other biounit)

Secreted phospholipase A2 type X in complex with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: F.68, G.70, G.72, D.89 Ligands: EM8.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:F.68, A:G.70, A:G.72, A:D.89, A:D.89

1 x EM8: (3~{R})-3-[3-[2-aminocarbonyl-6-(trifluoromethyloxy)indol-1-yl]phenyl]butanoic acid(Non-covalent)

EM8.2: 18 residues within 4Å: Chain A: I.44, L.47, A.48, P.59, I.60, Y.62, M.63, F.68, C.69, G.70, L.71, G.72, C.85, H.88, D.89, Y.92, I.136 Ligands: CA.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.62, A:L.71, A:Y.92, A:I.136 Hydrogen bonds: A:G.70, A:G.72, A:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giordanetto, F. et al., Design of Selective sPLA2-X Inhibitor (-)-2-{2-[Carbamoyl-6-(trifluoromethoxy)-1H-indol-1-yl]pyridine-2-yl}propanoic Acid. ACS Med Chem Lett (2018)

Release Date

2018-09-05

Peptides

Group 10 secretory phospholipase A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Group 10 secretory phospholipase A2

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