SMTL ID : 6g6u.1

The dynamic nature of the VDAC1 channels in bilayers: human VDAC1 at 2.7 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-dimer

Ligands

3 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

MC3.1: 7 residues within 4Å: Chain A: L.180, T.182, F.190, G.192, S.193, W.210, A.212 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.180, A:T.182, A:F.190, A:F.190, A:W.210 MC3.3: 8 residues within 4Å: Chain B: L.180, T.182, F.190, G.192, S.193, I.194, L.208, W.210 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.180, B:T.182, B:I.194, B:L.208, B:W.210 MC3.4: 5 residues within 4Å: Chain B: L.144, A.151, G.152, Y.153, F.169 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.144, B:A.151, B:Y.153, B:F.169, B:F.169

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: A.2, H.122, G.145, Y.146, E.147, G.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.122, A:G.145, A:G.148 NO3.5: 6 residues within 4Å: Chain B: A.2, H.122, G.145, Y.146, E.147, G.148 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.2, B:H.122, B:E.147, B:G.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Razeto, A. et al., The dynamic nature of the VDAC1 channels in bilayers as revealed by two crystal structures of the human isoform in bicelles at 2.7 and 3.3 Angstrom resolution: implications for VDAC1 voltage-dependent mechanism and for its oligomerization. To Be Published

Release Date

2019-04-10

Peptides

Voltage-dependent anion-selective channel protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Voltage-dependent anion-selective channel protein 1

Related Entries With Identical Sequence