SMTL ID : 6g6v.1

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis in complex with 4-(2-carboxybenzoyl)-2-nitrobenzoic acid at 1.9A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-hexamer

Ligands

6 x EO8: 4-(2-carboxyphenyl)carbonyl-2-nitro-benzoic acid(Non-covalent)

EO8.1: 13 residues within 4Å: Chain A: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 Chain C: L.131, E.134, V.135 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.38, A:L.38, A:L.74, C:L.131, C:V.135 Hydrogen bonds: A:V.75 Water bridges: A:N.107, A:N.107, A:N.107 EO8.2: 13 residues within 4Å: Chain A: L.131, E.134, V.135 Chain B: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.38, B:L.38, B:L.74, A:L.131, A:V.135 Hydrogen bonds: B:V.75 Water bridges: B:N.107, B:N.107, B:N.107 EO8.3: 13 residues within 4Å: Chain B: L.131, E.134, V.135 Chain C: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 9 PLIP interactions: 2 interactions with chain B, 7 interactions with chain C Hydrophobic interactions: B:L.131, B:V.135, C:L.38, C:L.38, C:L.74 Hydrogen bonds: C:V.75 Water bridges: C:N.107, C:N.107, C:N.107 EO8.4: 13 residues within 4Å: Chain D: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 Chain F: L.131, E.134, V.135 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:L.38, D:L.38, D:L.74, F:L.131, F:V.135 Hydrogen bonds: D:V.75 Water bridges: D:N.107, D:N.107, D:N.107 EO8.5: 13 residues within 4Å: Chain D: L.131, E.134, V.135 Chain E: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:L.38, E:L.38, E:L.74, D:L.131, D:V.135 Hydrogen bonds: E:V.75 Water bridges: E:N.107, E:N.107, E:N.107 EO8.6: 13 residues within 4Å: Chain E: L.131, E.134, V.135 Chain F: P.9, G.10, S.11, L.38, G.73, L.74, V.75, K.89, M.103, N.107 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:L.38, F:L.38, F:L.74, E:L.131, E:V.135 Hydrogen bonds: F:V.75 Water bridges: F:N.107, F:N.107, F:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaszczyk, M. et al., Fragment linking applied to the discovery of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase inhibitors. To Be Published

Release Date

2019-04-10

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Phosphopantetheine adenylyltransferase

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