SMTL ID : 6g85.1

Structure of Cdc14 bound to CBK1 PxL motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-2-1-1-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: Y.132, D.253, C.283, K.284, A.285, G.286, L.287, G.288, R.289 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.253, A:K.284, A:A.285, A:G.286, A:L.287, A:G.288, A:R.289 Water bridges: A:Q.325 Salt bridges: A:D.253, A:R.289 MES.9: 11 residues within 4Å: Chain B: G.131, Y.132, D.253, C.283, K.284, A.285, G.286, L.287, G.288, R.289, V.322 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.284, B:A.285, B:L.287, B:G.288, B:R.289 Water bridges: B:D.253, B:Q.325 Salt bridges: B:D.253, B:R.289

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.51, S.87, R.89, Q.90, N.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.87, A:S.87, A:N.93 Water bridges: A:F.51

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: N.222, G.276 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.222, A:N.222, A:G.276, A:G.276 EDO.4: 4 residues within 4Å: Chain A: N.220, N.221, N.222, K.278 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.278 Water bridges: A:N.220, A:N.221, A:N.222, A:N.222, A:K.278 EDO.5: 7 residues within 4Å: Chain A: S.346, K.348, P.349, S.350, P.358, E.364, Q.368 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.346, A:S.346, A:Q.368 Water bridges: A:S.350 EDO.6: 2 residues within 4Å: Chain A: V.5, Y.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.6

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: Q.245, R.275, G.354, G.355, L.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.275 Water bridges: A:Q.245, A:G.354

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 4 residues within 4Å: Chain A: E.193, H.195, H.206, H.238 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.193, A:E.193, A:H.195, A:H.206, A:H.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kataria, M. et al., A PxL motif promotes timely cell cycle substrate dephosphorylation by the Cdc14 phosphatase. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-10-17

Peptides

Tyrosine-protein phosphatase CDC14: AB
CBK1: C
CBK1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tyrosine-protein phosphatase CDC14

CBK1

CBK1

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