SMTL ID : 6g86.1

Structure of Cdc14 bound to SIC1 PxL motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 10 residues within 4Å: Chain A: G.131, Y.132, D.253, C.283, K.284, A.285, G.286, L.287, G.288, R.289 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.253, A:K.284, A:A.285, A:L.287, A:G.288, A:R.289 Water bridges: A:Y.132, A:Y.132 Salt bridges: A:D.253, A:R.289 MES.8: 10 residues within 4Å: Chain B: Y.132, D.253, C.283, K.284, A.285, G.286, L.287, G.288, R.289, V.322 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.253, B:K.284, B:A.285, B:G.286, B:L.287, B:G.288, B:R.289 Water bridges: B:Y.132 Salt bridges: B:D.253, B:R.289

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 5 residues within 4Å: Chain A: R.150, E.153, K.154, T.301, Y.302 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.150, A:K.154 Water bridges: A:K.154, A:Y.302 P6G.9: 6 residues within 4Å: Chain B: W.149, R.150, E.153, K.154, T.301, Y.302 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.150, B:K.154 Water bridges: A:L.331, A:N.334 P6G.10: 7 residues within 4Å: Chain B: L.259, S.260, K.263, T.342, T.343, I.360, S.361 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.263, B:W.339

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: N.45, N.55, G.57, H.58, Y.167, E.168, E.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.55, A:E.168 Water bridges: A:N.45, A:E.171 PEG.4: 6 residues within 4Å: Chain A: G.155, L.156, D.158, V.180, T.182, P.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.155, A:V.180 Water bridges: A:D.158 PEG.5: 4 residues within 4Å: Chain A: E.252, D.253, G.254, T.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.253 Water bridges: A:E.252 PEG.6: 5 residues within 4Å: Chain A: N.9, A.22, V.120, D.121, P.122 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.9, A:A.22, A:A.86, A:R.91 PEG.11: 6 residues within 4Å: Chain B: G.155, L.156, D.158, V.180, L.181, P.183 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.180

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain A: E.193, H.195, H.206, L.207, H.238 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.193, A:E.193, A:H.195, A:H.206, A:H.238 ZN.12: 5 residues within 4Å: Chain B: E.193, H.195, H.206, L.207, H.238 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.193, B:E.193, B:H.195, B:H.206, B:H.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kataria, M. et al., A PxL motif promotes timely cell cycle substrate dephosphorylation by the Cdc14 phosphatase. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-10-17

Peptides

Tyrosine-protein phosphatase CDC14: AB
Protein SIC1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Tyrosine-protein phosphatase CDC14

Protein SIC1

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