SMTL ID : 6g8r.1

SP140 PHD-Bromodomain complex with scFv

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Q.171, K.179, L.181, P.193, F.196, E.215, D.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.171, A:K.179, A:R.195, A:E.215, A:D.216 EDO.2: 5 residues within 4Å: Chain A: Q.172, K.173, P.174, G.175, K.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.173, A:G.175, A:K.176

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: C.8, C.11, H.28, C.31 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.8, B:C.11, B:H.28, B:C.31 ZN.4: 5 residues within 4Å: Chain B: C.20, C.23, R.25, C.45, C.48 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:C.23, B:C.45, B:C.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairhead, M. et al., SP140 PHD-Bromodomain complex with scFv. To Be Published

Release Date

2018-04-18

Peptides

single-chain variable fragment: A
Nuclear body protein SP140: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

single-chain variable fragment

Nuclear body protein SP140