SMTL ID : 6g9f.1

Structural basis for the inhibition of E. coli PBP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)

NXL.1: 10 residues within 4Å: Chain A: A.275, S.276, K.279, W.316, S.333, D.335, I.399, S.491, G.492, T.493 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.316 Hydrogen bonds: A:S.276, A:S.333, A:S.333, A:D.335, A:S.491, A:G.492, A:T.493, A:T.493 Water bridges: A:T.475, A:K.490, A:K.518, A:K.518, A:L.519, A:L.519 Salt bridges: A:K.518

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levy, N. et al., Structural Basis for E. coli Penicillin Binding Protein (PBP) 2 Inhibition, a Platform for Drug Design. J.Med.Chem. (2019)

Release Date

2019-05-22

Peptides

Peptidoglycan D,D-transpeptidase MrdA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan D,D-transpeptidase MrdA