Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
OpenStructure Actions API
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6gar.1
Crystal structure of oxidised ferredoxin/flavodoxin NADP+ oxidoreductase 1 (FNR1) from Bacillus cereus
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Non-covalent)
FAD.1:
32 residues within 4Å:
Chain A:
I.12
,
G.13
,
G.14
,
G.15
,
P.16
,
A.17
,
I.35
,
E.36
,
F.37
,
H.38
,
G.43
,
K.44
,
Y.48
,
I.53
,
D.55
,
T.86
,
K.87
,
V.88
,
A.117
,
T.118
,
G.119
,
S.120
,
G.121
,
I.122
,
A.288
,
G.289
,
D.290
,
L.300
,
I.301
Chain B:
V.329
,
S.330
,
S.331
33
PLIP interactions
:
29 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:K.44
,
A:Y.48
,
A:Y.48
,
B:V.329
Hydrogen bonds:
A:G.14
,
A:A.17
,
A:F.37
,
A:G.43
,
A:K.44
,
A:K.44
,
A:Y.48
,
A:Y.48
,
A:D.55
,
A:V.88
,
A:V.88
,
A:S.120
,
A:D.290
,
A:D.290
,
A:I.301
,
B:S.330
,
B:S.331
,
B:S.331
Water bridges:
A:G.15
,
A:G.18
,
A:H.38
,
A:T.118
,
A:S.120
,
A:G.121
,
A:I.291
,
A:A.302
,
A:A.304
Salt bridges:
A:K.44
,
A:K.44
FAD.4:
31 residues within 4Å:
Chain A:
V.329
,
S.330
,
S.331
,
H.332
Chain B:
G.13
,
G.14
,
G.15
,
P.16
,
A.17
,
E.36
,
F.37
,
H.38
,
G.43
,
K.44
,
Y.48
,
I.53
,
D.55
,
T.86
,
K.87
,
V.88
,
A.117
,
T.118
,
G.119
,
S.120
,
G.121
,
I.122
,
G.289
,
D.290
,
L.300
,
I.301
Ligands:
TLA.2
29
PLIP interactions
:
26 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:Y.48
,
B:Y.48
Hydrogen bonds:
B:G.14
,
B:G.15
,
B:A.17
,
B:F.37
,
B:G.43
,
B:K.44
,
B:D.55
,
B:V.88
,
B:V.88
,
B:S.120
,
B:D.290
,
B:D.290
,
B:I.301
,
A:S.330
,
A:S.331
,
A:S.331
Water bridges:
B:G.18
,
B:H.38
,
B:T.118
,
B:G.119
,
B:S.120
,
B:G.121
,
B:L.256
,
B:D.290
,
B:D.290
,
B:A.302
,
B:A.304
1 x
TLA
:
L(+)-TARTARIC ACID
(Non-covalent)
TLA.2:
4 residues within 4Å:
Chain A:
M.328
,
V.329
,
H.332
Ligands:
FAD.4
1
PLIP interactions
:
1 interactions with chain A
Salt bridges:
A:H.332
2 x
OXM
:
OXAMIC ACID
(Non-covalent)
OXM.3:
2 residues within 4Å:
Chain A:
A.273
,
G.274
No protein-ligand interaction detected (PLIP)
OXM.5:
1 residues within 4Å:
Chain B:
E.295
No protein-ligand interaction detected (PLIP)
1 x
ACT
:
ACETATE ION
(Non-functional Binders)
ACT.6:
0 residues within 4Å:
(No contacts)
1
PLIP interactions
:
1 interactions with chain B
Salt bridges:
B:H.332
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gudim, I. et al., The Characterization of Different Flavodoxin Reductase-Flavodoxin (FNR-Fld) Interactions Reveals an Efficient FNR-Fld Redox Pair and Identifies a Novel FNR Subclass. Biochemistry (2018)
Release Date
2018-09-05
Peptides
Ferredoxin--NADP reductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Ferredoxin--NADP reductase
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme