SMTL ID : 6gau.1

Extremely 'open' clamp structure of DNA gyrase: role of the Corynebacteriales GyrB specific insert

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 11 residues within 4Å: Chain A: E.49, N.53, E.57, D.80, G.84, I.85, V.100, G.125, V.126, S.170 Ligands: MG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.49, A:E.49, A:N.53, A:D.80, A:G.84, A:V.126, A:S.170 ANP.3: 12 residues within 4Å: Chain B: E.49, N.53, E.57, D.80, G.84, I.85, P.86, V.100, G.125, V.126, S.170 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.49, B:D.52, B:D.52, B:N.53, B:E.57, B:D.80, B:G.84, B:G.125, B:V.126, B:S.170

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.49, N.53 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain B: E.49, N.53, V.126 Ligands: ANP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrella, S. et al., Overall Structures of Mycobacterium tuberculosis DNA Gyrase Reveal the Role of a Corynebacteriales GyrB-Specific Insert in ATPase Activity. Structure (2019)

Release Date

2019-02-20

Peptides

DNA gyrase subunit B,DNA gyrase subunit A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA gyrase subunit B,DNA gyrase subunit A

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