SMTL ID : 6gbi.1

Wnt signalling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: V.42, T.43, G.44, K.73, R.90, N.91 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.43, A:K.73 Water bridges: A:V.42

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.26, C.27, P.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.26, A:Y.26 GOL.3: 4 residues within 4Å: Chain A: N.15, Y.16, L.88, R.90 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.15, A:Y.16, A:R.90, A:R.90 Water bridges: A:N.15, A:N.15, A:N.15, A:S.46, A:S.46

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: C.64, K.73, N.91, E.92 Ligands: NAG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.91, A:E.92 Water bridges: A:C.64, A:K.73, A:E.92 Salt bridges: A:K.73 SO4.5: 4 residues within 4Å: Chain A: R.65, S.67, E.68, V.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.67, A:E.68 Water bridges: A:S.67, A:S.67 Salt bridges: A:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structure of the Wnt signaling enhancer LYPD6 and its interactions with the Wnt coreceptor LRP6. FEBS Lett. (2018)

Release Date

2018-08-15

Peptides

Ly6/PLAUR domain-containing protein 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ly6/PLAUR domain-containing protein 6