- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.2: 6 residues within 4Å:- Chain A: H.26, H.28, D.272
- Ligands: FMT.1, ZN.3, EDO.5
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.26, A:H.28, A:D.272, H2O.2
ZN.3: 7 residues within 4Å:- Chain A: W.102, H.172, H.201, R.225
- Ligands: FMT.1, ZN.2, EDO.5
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.172, A:H.201, H2O.1, H2O.2
ZN.16: 6 residues within 4Å:- Chain B: H.26, H.28, D.272
- Ligands: FMT.15, ZN.17, EDO.19
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.26, B:H.28, B:D.272, H2O.10
ZN.17: 7 residues within 4Å:- Chain B: W.102, H.172, H.201, R.225
- Ligands: FMT.15, ZN.16, EDO.19
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.172, B:H.201, H2O.9, H2O.10
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 7 residues within 4Å:- Chain A: H.28, G.31, W.228, D.272, T.274, F.277
- Ligands: EDO.5
Ligand excluded by PLIPEDO.5: 10 residues within 4Å:- Chain A: H.28, I.77, W.102, F.277, S.279
- Ligands: FMT.1, ZN.2, ZN.3, EDO.4, EDO.7
Ligand excluded by PLIPEDO.6: 7 residues within 4Å:- Chain A: Y.127, G.128, I.129, E.130, D.131, T.132, G.133
Ligand excluded by PLIPEDO.7: 5 residues within 4Å:- Chain A: W.102, H.172, R.225, L.242
- Ligands: EDO.5
Ligand excluded by PLIPEDO.8: 4 residues within 4Å:- Chain A: P.41, S.46, R.47, D.48
Ligand excluded by PLIPEDO.9: 6 residues within 4Å:- Chain A: D.204, R.225, L.242, L.243, G.244, R.251
Ligand excluded by PLIPEDO.10: 5 residues within 4Å:- Chain A: K.146, A.147, T.148, E.152, Q.182
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain A: P.227, W.248, V.291, N.292, F.298
Ligand excluded by PLIPEDO.18: 7 residues within 4Å:- Chain B: H.28, G.31, W.228, D.272, T.274, F.277
- Ligands: EDO.19
Ligand excluded by PLIPEDO.19: 10 residues within 4Å:- Chain B: H.28, I.77, W.102, F.277, S.279
- Ligands: FMT.15, ZN.16, ZN.17, EDO.18, EDO.21
Ligand excluded by PLIPEDO.20: 7 residues within 4Å:- Chain B: Y.127, G.128, I.129, E.130, D.131, T.132, G.133
Ligand excluded by PLIPEDO.21: 5 residues within 4Å:- Chain B: W.102, H.172, R.225, L.242
- Ligands: EDO.19
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain B: P.41, S.46, R.47, D.48
Ligand excluded by PLIPEDO.23: 6 residues within 4Å:- Chain B: D.204, R.225, L.242, L.243, G.244, R.251
Ligand excluded by PLIPEDO.24: 5 residues within 4Å:- Chain B: K.146, A.147, T.148, E.152, Q.182
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain B: P.227, W.248, V.291, N.292, F.298
Ligand excluded by PLIP- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.12: 3 residues within 4Å:- Chain A: K.53, R.56, R.60
5 PLIP interactions:5 interactions with chain A- Water bridges: A:G.57, A:R.60
- Salt bridges: A:K.53, A:R.56, A:R.60
SO4.13: 2 residues within 4Å:- Chain A: W.248, Q.249
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.249
- Water bridges: A:W.248
SO4.14: 1 residues within 4Å:- Chain A: R.110
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.110, A:R.110
- Salt bridges: A:R.110
SO4.26: 3 residues within 4Å:- Chain B: K.53, R.56, R.60
5 PLIP interactions:5 interactions with chain B- Water bridges: B:G.57, B:R.60
- Salt bridges: B:K.53, B:R.56, B:R.60
SO4.27: 2 residues within 4Å:- Chain B: W.248, Q.249
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.249
- Water bridges: B:W.248
SO4.28: 1 residues within 4Å:- Chain B: R.110
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.110, B:R.110
- Salt bridges: B:R.110
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khersonsky, O. et al., Automated Design of Efficient and Functionally Diverse Enzyme Repertoires. Mol. Cell (2018)
- Release Date
- 2018-10-24
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khersonsky, O. et al., Automated Design of Efficient and Functionally Diverse Enzyme Repertoires. Mol. Cell (2018)
- Release Date
- 2018-10-24
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A