SMTL ID : 6gci.1

Structure of the bongkrekic acid-inhibited mitochondrial ADP/ATP carrier

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BKC: Bongkrekic acid(Non-covalent)

BKC.1: 21 residues within 4Å: Chain A: K.30, R.88, Y.89, T.92, Q.93, N.96, S.134, L.135, V.138, D.142, S.189, G.192, I.193, Y.196, R.197, Y.200, S.238, D.242, R.245, R.287, G.291 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.89, A:T.92, A:L.135, A:L.135, A:V.138, A:D.142, A:I.193, A:Y.196, A:Y.196, A:D.242, A:R.287 Hydrogen bonds: A:N.96, A:N.96, A:Y.196, A:Y.196 Salt bridges: A:K.30, A:R.88, A:R.197, A:R.197

5 x CDL: CARDIOLIPIN(Non-covalent)

CDL.2: 11 residues within 4Å: Chain A: L.136, I.179, Y.183, R.184, G.185, F.186, G.187, P.188, A.191, S.260, S.261 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.136, A:I.179, A:F.186 Hydrogen bonds: A:G.185, A:G.187, A:S.260, A:S.261 Salt bridges: A:R.184 CDL.3: 4 residues within 4Å: Chain A: W.79, G.81, N.82, T.83 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.79 Hydrogen bonds: A:G.81, A:N.82, A:T.83, A:T.83 CDL.4: 6 residues within 4Å: Chain A: F.278, K.279, G.280, A.281, G.282, A.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.280, A:A.281, A:G.282 CDL.5: 3 residues within 4Å: Chain A: G.165, L.166, I.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.166, A:I.167 CDL.6: 3 residues within 4Å: Chain A: G.61, I.62, I.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.62, A:I.63

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.7: 7 residues within 4Å: Chain B: R.45, N.93, Y.95, Y.109, W.114, G.115, Q.116 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.45, B:R.45, B:N.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruprecht, J.J. et al., The Molecular Mechanism of Transport by the Mitochondrial ADP/ATP Carrier. Cell (2019)

Release Date

2019-01-09

Peptides

mitochondrial ADP/ATP carrier: A
Nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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mitochondrial ADP/ATP carrier

Nanobody