SMTL ID : 6gdr.1

DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: T.10, G.11, G.12 Chain B: C.9 Chain C: C.1 No protein-ligand interaction detected (PLIP) PO4.2: 4 residues within 4Å: Chain A: G.13, G.14 Chain B: A.7, C.8 No protein-ligand interaction detected (PLIP)

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 16 residues within 4Å: Chain C: C.1, A.2 Chain D: A.14, S.32, E.33, K.34, L.35, G.37, R.39, R.50, E.73, F.133, V.164, M.191, L.207, K.209 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.32, D:K.34, D:L.35, D:R.39, D:R.50, D:R.50 Water bridges: D:A.14, D:A.14 Salt bridges: D:K.34, D:K.209 pi-Stacking: D:F.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williamson, A. et al., DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases. Nucleic Acids Res. (2018)

Release Date

2018-07-25

Peptides

DNA ligase: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

DNA ligase