SMTL ID : 6geb.1 (1 other biounit)

X-ray structure of the Legionella pneumophila ATPase DotB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: A.171, T.172, G.173, S.174, G.175, K.176, S.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.173, A:S.174, A:G.175, A:K.176, A:S.177 Salt bridges: A:K.176 PO4.2: 7 residues within 4Å: Chain B: A.171, T.172, G.173, S.174, G.175, K.176, S.177 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.173, B:S.174, B:G.175, B:K.176, B:S.177 Salt bridges: B:K.176 PO4.3: 7 residues within 4Å: Chain C: A.171, T.172, G.173, S.174, G.175, K.176, S.177 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.173, C:S.174, C:G.175, C:K.176, C:S.177 Salt bridges: C:K.176 PO4.4: 6 residues within 4Å: Chain D: T.172, G.173, S.174, G.175, K.176, S.177 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.172, D:T.172, D:G.173, D:S.174, D:G.175, D:K.176, D:S.177 Salt bridges: D:K.176 PO4.5: 7 residues within 4Å: Chain E: A.171, T.172, G.173, S.174, G.175, K.176, S.177 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:G.173, E:S.174, E:G.175, E:K.176, E:S.177 Salt bridges: E:K.176 PO4.6: 7 residues within 4Å: Chain F: A.171, T.172, G.173, S.174, G.175, K.176, S.177 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:G.173, F:S.174, F:G.175, F:K.176, F:S.177 Salt bridges: F:K.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prevost, M.S. et al., X-ray crystal structures of the type IVb secretion system DotB ATPases. Protein Sci. (2018)

Release Date

2018-05-30

Peptides

DotB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

DotB

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