SMTL ID : 6gf8.2 (1 other biounit)

Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.47, W.54, L.55, N.56 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: N.47, W.54, L.55, N.56 No protein-ligand interaction detected (PLIP)

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: F.17, G.18, W.54, A.67, G.68 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.17 Hydrogen bonds: A:G.18 MPD.3: 3 residues within 4Å: Chain A: E.70 Chain B: C.72, H.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.50 MPD.5: 5 residues within 4Å: Chain B: F.17, G.18, W.54, A.67, G.68 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.17 Hydrogen bonds: B:G.18 MPD.6: 3 residues within 4Å: Chain A: C.72, H.73 Chain B: E.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimura, K. et al., Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility. Nat Commun (2019)

Release Date

2019-06-19

Peptides

Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1

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