SMTL ID : 6gff.1 (1 other biounit)

Structure of GARP (LRRC32) in complex with latent TGF-beta1 and MHG-8 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-2-2-1-1-1-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain E: H.162, N.184, V.203, D.205, W.228, R.232 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.232 NAG-NAG-BMA.2: 10 residues within 4Å: Chain E: R.232, E.233, Y.250, N.252, S.254, N.255, N.300, D.302 Ligands: NAG-NAG-BMA.3, NAG-NAG-BMA.3 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.255 NAG-NAG-BMA.3: 10 residues within 4Å: Chain E: S.254, N.300, D.302, S.304, Y.305, F.324, N.326, L.348 Ligands: NAG-NAG-BMA.2, NAG-NAG-BMA.2 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.324 Hydrogen bonds: E:N.300

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 4 residues within 4Å: Chain E: A.503, E.504, R.525, N.526 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lienart, S. et al., Structural basis of latent TGF-beta 1 presentation and activation by GARP on human regulatory T cells. Science (2018)

Release Date

2018-11-07

Peptides

Transforming growth factor beta-1: AC
Transforming growth factor beta-1: BD
Leucine-rich repeat-containing protein 32: E
MHG-8 Fab light chain: F
MHG-8 Fab heavy chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
I

F
K

G
L

Transforming growth factor beta-1

Transforming growth factor beta-1

Leucine-rich repeat-containing protein 32

MHG-8 Fab light chain

MHG-8 Fab heavy chain

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