SMTL ID : 6gfj.1

Structure of RIP2 CARD domain fused to crystallisable MBP tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

4 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, M.331, W.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.66, A:R.67, A:R.67, A:Y.156, A:R.345 GLC-GLC.2: 14 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, M.331, W.341 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.66, B:R.67, B:R.67, B:Y.156, B:R.345 GLC-GLC.3: 15 residues within 4Å: Chain C: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.66, C:R.67, C:R.67, C:Y.156, C:R.345 GLC-GLC.4: 14 residues within 4Å: Chain D: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, W.341, R.345 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.66, D:R.67, D:R.67, D:E.154, D:Y.156, D:R.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellegrini, E. et al., RIP2 filament formation is required for NOD2 dependent NF-kappa B signalling. Nat Commun (2018)

Release Date

2019-03-13

Peptides

Sugar ABC transporter substrate-binding protein,Receptor-interacting serine/threonine-protein kinase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Sugar ABC transporter substrate-binding protein,Receptor-interacting serine/threonine-protein kinase 2