SMTL ID : 6gfk.1 (3 other biounits)

delta-N METTL16 MTase domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 22 residues within 4Å: Chain A: L.35, P.37, R.42, G.70, T.71, G.72, I.76, Y.77, T.92, E.93, V.94, D.95, C.98, V.120, Q.122, T.124, L.125, N.144, P.145, P.146, F.148, F.187 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.35 Hydrogen bonds: A:G.70, A:Y.77, A:T.92, A:V.94, A:D.95, A:T.124, A:N.144, A:R.190 Water bridges: A:R.190, A:R.190 Salt bridges: A:R.42

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: L.35, L.41, R.42, N.144, M.208, R.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.144 Water bridges: A:R.42 Salt bridges: A:R.42, A:R.242 SO4.3: 1 residues within 4Å: Chain A: R.13 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.13 Salt bridges: A:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mendel, M. et al., Methylation of Structured RNA by the m6A Writer METTL16 Is Essential for Mouse Embryonic Development. Mol. Cell (2018)

Release Date

2018-09-19

Peptides

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase

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