SMTL ID : 6ghc.1

Modification dependent EcoKMcrA restriction endonuclease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.217, C.220, C.258, C.261 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.217, A:C.220, A:C.258, A:C.261 ZN.2: 3 residues within 4Å: Chain A: H.238, H.262, H.266 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.238, A:H.262, A:H.266, H2O.2 ZN.3: 4 residues within 4Å: Chain B: C.217, C.220, C.258, C.261 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.217, B:C.220, B:C.258, B:C.261 ZN.4: 4 residues within 4Å: Chain B: H.238, H.239, H.262, H.266 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.238, B:H.262, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czapinska, H. et al., Activity and structure of EcoKMcrA. Nucleic Acids Res. (2018)

Release Date

2018-08-08

Peptides

5-methylcytosine-specific restriction enzyme A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5-methylcytosine-specific restriction enzyme A