SMTL ID : 6gjz.1

CryoEM structure of the MDA5-dsRNA filament in complex with AMPPNP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.889, N.891, C.892, M.894, C.944, C.946, Q.948, W.950 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.889, A:C.892, A:C.944, A:C.946

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 10 residues within 4Å: Chain A: Q.308, R.310, Q.313, T.332, G.333, S.334, G.335, K.336, T.337, R.338 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.310, A:R.310, A:Q.313, A:Q.313, A:G.333, A:G.335, A:K.336, A:K.336, A:T.337, A:R.338 pi-Cation interactions: A:R.310, A:R.310, A:R.338, A:R.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Q. et al., Cryo-EM Structures of MDA5-dsRNA Filaments at Different Stages of ATP Hydrolysis. Mol. Cell (2018)

Release Date

2018-11-21

Peptides

Interferon-induced helicase C domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced helicase C domain-containing protein 1

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