SMTL ID : 6gku.1

Structure of galectin-10 in complex with the Fab fragment of a Charcot-Leyden crystal solubilizing antibody, 6F5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.118, P.120, Q.145, S.146, S.147 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.147, H2O.6 CA.3: 5 residues within 4Å: Chain D: N.118, P.120, Q.145, S.146, S.147 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:S.147, H2O.38

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 8 residues within 4Å: Chain B: G.42, K.43 Chain C: P.8, D.87, Y.89, G.103, G.104, H.106 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.89 Water bridges: C:D.87, B:G.42 PGE.4: 8 residues within 4Å: Chain E: G.42, K.43 Chain F: P.8, D.87, Y.89, G.103, G.104, H.106 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Water bridges: E:G.42, F:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, E.K. et al., Protein crystallization promotes type 2 immunity and is reversible by antibody treatment. Science (2019)

Release Date

2019-06-05

Peptides

Galectin-10: AD
Fab 6F5 - Heavy Chain: BE
Fab 6F5 - Light chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
H

E
H

C
L

F
L

Galectin-10

Fab 6F5 - Heavy Chain

Fab 6F5 - Light chain