SMTL ID : 6gmv.1

MamM CTD - Nickel form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.10, K.67, I.68, R.69, R.70 Chain B: A.6 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.69, A:R.70 Water bridges: A:R.69, A:R.69, A:R.70, B:R.10 Salt bridges: A:R.10, A:R.69, A:R.70 SO4.2: 5 residues within 4Å: Chain A: H.3, R.70 Chain B: H.3, R.70 Ligands: SO4.6 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Water bridges: B:R.70, A:R.70, A:R.70, A:R.70, A:R.70 Salt bridges: B:R.70, A:R.70 Hydrogen bonds: A:H.3 SO4.5: 6 residues within 4Å: Chain A: A.6 Chain B: R.10, K.67, I.68, R.69, R.70 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.69, B:R.70 Water bridges: B:R.69, B:R.69, B:R.70, A:R.10 Salt bridges: B:R.10, B:R.69, B:R.70 SO4.6: 5 residues within 4Å: Chain A: H.3, R.70 Chain B: H.3, R.70 Ligands: SO4.2 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:H.3 Water bridges: A:R.70, B:R.70, B:R.70, B:R.70, B:R.70 Salt bridges: A:R.70, B:R.70

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.54, E.58 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.54, H2O.1, H2O.2, H2O.2, H2O.3 NI.7: 2 residues within 4Å: Chain B: H.54, E.58 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.54, H2O.3, H2O.4, H2O.5, H2O.5

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 3 residues within 4Å: Chain A: C.65, I.71, E.72 No protein-ligand interaction detected (PLIP) BME.8: 3 residues within 4Å: Chain B: C.65, I.71, E.72 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barber-Zucker, S. et al., MamM CTD - Nickel form. To Be Published

Release Date

2019-06-19

Peptides

MamM CTD - Nickel form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MamM CTD - Nickel form

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