SMTL ID : 6gn5.1

CRYSTAL STRUCTURE OF HUMAN GRAMD1C START DOMAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: L.34, F.35, M.41, M.70, E.89, Q.91, Y.126, Y.169 Ligands: MPD.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.34, A:F.35, A:Y.126 Hydrogen bonds: A:E.89, A:Q.91, A:Y.126, A:Y.169 Water bridges: A:Y.126 MPD.2: 9 residues within 4Å: Chain A: Y.72, I.74, V.109, N.124, L.166, Y.169, F.170 Ligands: MPD.1, MPD.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.74, A:L.166, A:Y.169, A:F.170 Hydrogen bonds: A:Y.72, A:N.124 Water bridges: A:Y.126 MPD.3: 6 residues within 4Å: Chain A: R.48, I.50, I.74, S.165, Y.169 Ligands: MPD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.48, A:I.50, A:Y.169 Hydrogen bonds: A:R.48, A:R.48 MPD.4: 3 residues within 4Å: Chain A: T.111, F.120 Ligands: MPD.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.111, A:F.120 MPD.5: 10 residues within 4Å: Chain A: L.80, T.81, V.114, P.115, F.120, L.157, I.158, N.161, S.162 Ligands: MPD.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.80, A:V.114, A:I.158, A:N.161 Hydrogen bonds: A:P.115, A:S.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laraia, L. et al., The cholesterol transfer protein GRAMD1A regulates autophagosome biogenesis. Nat.Chem.Biol. (2019)

Release Date

2019-06-19

Peptides

GRAM domain-containing protein 1C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GRAM domain-containing protein 1C